This has happened to me as well. I was actually just about to hit Ctrl+S and then BAM... it wiped out my scene! my entire hierachy, gone! I watched all objects disappear before my eyes!
The worst part is... it happened while I was already in the motion of hitting ctrl+S!
LUCKILY... I was working on the dropbox, which keeps previous versions backed up, so i simply downloaded the most recent scene i could find that was larger than 1kb.
Now... this has happened several times since, and this has only happened for me in ONE particular project. The first time this happened, I'll admit, I panicked, but after that, when it happened, I simply closed unity (DONT SAVE!!!) and reopened it to my scene, and everything was back.
It actually only wipes out stuff in your scene, and your scene is a file that you are personally responsible for saving, so if you havnt saved already, then no damage has been done to your actual scene FILE.
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